NameFlagsCard.TypeDescription & Constraintsdoco
.. GenomicStudy TUDomainResourceGenomic Study

Elements defined in Ancestors: id, meta, implicitRules, language, text, contained, extension, modifierExtension
... identifier Σ0..*IdentifierIdentifiers for this genomic study

... status ?!Σ1..1coderegistered | available | cancelled | entered-in-error | unknown
Binding: Genomic Study Status (Required)
... type Σ0..*CodeableConceptThe type of the study (e.g., Familial variant segregation, Functional variation detection, or Gene expression profiling)
Binding: Genomic Study Type (Example)

... subject Σ1..1Reference(Patient | Group | Substance | BiologicallyDerivedProduct | NutritionProduct)The primary subject of the genomic study
... encounter Σ0..1Reference(Encounter)The healthcare event with which this genomics study is associated
... startDate 0..1dateTimeWhen the genomic study was started
... basedOn 0..*Reference(ServiceRequest | Task)Event resources that the genomic study is based on

... referrer 0..1Reference(Practitioner | PractitionerRole)Healthcare professional who requested or referred the genomic study
... interpreter 0..*Reference(Practitioner | PractitionerRole)Healthcare professionals who interpreted the genomic study

... reason 0..*CodeableReference(Condition | Observation)Why the genomic study was performed

... instantiatesCanonical 0..1canonical(PlanDefinition)The defined protocol that describes the study
... instantiatesUri 0..1uriThe URL pointing to an externally maintained protocol that describes the study
... note 0..*AnnotationComments related to the genomic study

... description 0..1markdownDescription of the genomic study
... analysis 0..*BackboneElementGenomic Analysis Event

.... identifier Σ0..*IdentifierIdentifiers for the analysis event

.... methodType Σ0..*CodeableConceptType of the methods used in the analysis (e.g., FISH, Karyotyping, MSI)
Binding: Genomic Study Method Type (Example)

.... changeType 0..*CodeableConceptType of the genomic changes studied in the analysis (e.g., DNA, RNA, or AA change)
Binding: Genomic Study Change Type (Example)

.... genomeBuild 0..1CodeableConceptGenome build that is used in this analysis
Binding: HumanRefSeqNCBIBuildId (Extensible)
.... instantiatesCanonical 0..1canonical(PlanDefinition | ActivityDefinition)The defined protocol that describes the analysis
.... instantiatesUri 0..1uriThe URL pointing to an externally maintained protocol that describes the analysis
.... title Σ0..1stringName of the analysis event (human friendly)
.... focus Σ0..*Reference(Any)What the genomic analysis is about, when it is not about the subject of record

.... specimen Σ0..*Reference(Specimen)The specimen used in the analysis event

.... date 0..1dateTimeThe date of the analysis event
.... note 0..*AnnotationAny notes capture with the analysis event

.... protocolPerformed 0..1Reference(Procedure | Task)The protocol that was performed for the analysis event
.... regionsStudied 0..*Reference(DocumentReference | Observation)The genomic regions to be studied in the analysis (BED file)

.... regionsCalled 0..*Reference(DocumentReference | Observation)Genomic regions actually called in the analysis event (BED file)

.... input 0..*BackboneElementInputs for the analysis event

..... file Σ0..1Reference(DocumentReference)File containing input data
..... type 0..1CodeableConceptType of input data (e.g., BAM, CRAM, or FASTA)
Binding: Genomic Study Data Format (Example)
..... generatedBy[x] 0..1The analysis event or other GenomicStudy that generated this input file
...... generatedByIdentifierIdentifier
...... generatedByReferenceReference(GenomicStudy)
.... output 0..*BackboneElementOutputs for the analysis event

..... file Σ0..1Reference(DocumentReference)File containing output data
..... type Σ0..1CodeableConceptType of output data (e.g., VCF, MAF, or BAM)
Binding: Genomic Study Data Format (Example)
.... performer 0..*BackboneElementPerformer for the analysis event

..... actor 0..1Reference(Practitioner | PractitionerRole | Organization | Device)The organization, healthcare professional, or others who participated in performing this analysis
..... role 0..1CodeableConceptRole of the actor for this analysis
.... device 0..*BackboneElementDevices used for the analysis (e.g., instruments, software), with settings and parameters

..... device 0..1Reference(Device)Device used for the analysis
..... function 0..1CodeableConceptSpecific function for the device used for the analysis

doco Documentation for this format