NameFlagsCard.TypeDescription & Constraintsdoco
.. MolecularSequence TUDomainResourceRepresentation of a molecular sequence

Elements defined in Ancestors: id, meta, implicitRules, language, text, contained, extension, modifierExtension
... identifier Σ0..*IdentifierUnique ID for this particular sequence

... type Σ0..1codeaa | dna | rna
Binding: sequence Type (Required)
... subject Σ0..1Reference(Patient | Group | Substance | BiologicallyDerivedProduct | NutritionProduct)Subject this sequence is associated too
... focus Σ0..*Reference(Any)What the molecular sequence is about, when it is not about the subject of record

... specimen Σ0..1Reference(Specimen)Specimen used for sequencing
... device Σ0..1Reference(Device)The method for sequencing
... performer Σ0..1Reference(Organization)Who should be responsible for test result
... literal Σ0..1stringSequence that was observed
... formatted Σ0..*AttachmentEmbedded file or a link (URL) which contains content to represent the sequence

... relative Σ0..*BackboneElementA sequence defined relative to another sequence

.... coordinateSystem Σ1..1CodeableConceptWays of identifying nucleotides or amino acids within a sequence
Binding: LL5323-2 (Extensible)
.... ordinalPosition 0..1integerIndicates the order in which the sequence should be considered when putting multiple 'relative' elements together
.... sequenceRange 0..1RangeIndicates the nucleotide range in the composed sequence when multiple 'relative' elements are used together
.... startingSequence ΣC0..1BackboneElementA sequence used as starting sequence
+ Rule: Both genomeAssembly and chromosome must be both contained if either one of them is contained
+ Rule: Have and only have one of the following elements in startingSequence: 1. genomeAssembly; 2 sequence
..... genomeAssembly ΣC0..1CodeableConceptThe genome assembly used for starting sequence, e.g. GRCh38
Binding: LL1040-6 (Extensible)
..... chromosome ΣC0..1CodeableConceptChromosome Identifier
Binding: LL2938-0 (Required)
..... sequence[x] ΣC0..1The reference sequence that represents the starting sequence
Binding: Multiple bindings acceptable (NCBI or LRG) (Example)
...... sequenceCodeableConceptCodeableConcept
...... sequenceStringstring
...... sequenceReferenceReference(MolecularSequence)
..... windowStart Σ0..1integerStart position of the window on the starting sequence
..... windowEnd Σ0..1integerEnd position of the window on the starting sequence
..... orientation Σ0..1codesense | antisense
Binding: orientation Type (Required)
..... strand Σ0..1codewatson | crick
Binding: strand Type (Required)
.... edit Σ0..*BackboneElementChanges in sequence from the starting sequence

..... start Σ0..1integerStart position of the edit on the starting sequence
..... end Σ0..1integerEnd position of the edit on the starting sequence
..... replacementSequence Σ0..1stringAllele that was observed
..... replacedSequence Σ0..1stringAllele in the starting sequence

doco Documentation for this format